ETE Toolkit is a Python library for analyzing, manipulating, and visualizing phylogenetic trees, designed for scientists and developers in bioinformatics.
Visualize and analyze phylogenetic trees in Python
ETE Toolkit is a Python library that helps you easily analyze, manipulate, and visualize phylogenetic trees. Whether you're working with evolutionary biology data or need to manage hierarchical tree structures, this toolkit offers a robust set of features for both scientists and developers.
You can load, create, search, and modify tree data directly through the Python API, making complex analyses much more straightforward. The site provides comprehensive documentation, practical tutorials, and a gallery of examples to help you get started quickly.
If you're interested in phylogenomic research or need tools for tree visualization, ETE Toolkit stands out for its flexibility and open-source approach. With downloadable resources and active community support, it’s a handy resource for anyone working with biological data or tree structures.
Discover websites similar to Etetoolkit.org. Section 1 prioritizes sites with matching domain extensions and/or languages. Section 2 offers worldwide alternatives.
Explore NumPy, an open-source Python library offering fast, powerful tools for numerical computing and data analysis with easy-to-use n-dimensional arrays.
SemanticKITTI offers a large, annotated LiDAR dataset for research in 3D scene understanding, supporting computer vision and autonomous driving projects.
The HDF Group offers tools, libraries, and support for managing, sharing, and preserving scientific and engineering data across platforms and environments.
Access integrated bacterial and viral data, powerful bioinformatics tools, and research workflows for infectious disease investigation and analysis.
OPeNDAP offers free, open-source tools to help researchers and data providers access, share, and manage distributed scientific datasets easily.
CAS offers scientific research platforms and data solutions to help researchers accelerate discoveries, manage information, and drive innovation across fields.
Brainiak offers advanced Python tools for fast, collaborative analysis of brain imaging data, featuring tutorials, docs, and real-time fMRI support.
Access and analyze genome data for non-vertebrate species with interactive tools for data exploration, visualization, and research support.
Global Fishing Watch offers interactive maps and data tools to track fishing activity, promote ocean transparency, and support sustainable fisheries worldwide.
Access and explore open ecological and environmental data from the NEON network, supporting research with downloadable datasets and analysis tools.
MDAnalysis offers open-source tools for analyzing molecular simulation data, helping researchers explore molecular structures and dynamics easily.
Explore biological networks with tools, resources, and training for researchers to analyze genes, proteins, and interactions in biomedical science.
Explore and visualize genomics data with open-source IGV tools, available as desktop, web, and notebook apps for scientific research and analysis.
VCell offers virtual cell modeling and analysis tools for researchers and students in computational cell biology, with tutorials and community support.
Explore detailed Drosophila brain anatomy, neuron connections, and gene expression with interactive 3D tools designed for neurobiology research.
Movebank lets you explore, manage, and share animal tracking data for research and collaboration in wildlife movement and ecology studies worldwide.
CodaLab Worksheets lets you run, share, and reproduce data experiments and research code online, making collaboration and transparency simple.
Open Source Brain shares open data, models, and code for neuroscience research, letting you explore and analyze brain science projects interactively online.
Scilab is an open-source platform for numerical analysis, data visualization, and algorithm development, with tools for modeling and simulation.
JBrowse is a flexible genome browser for exploring and visualizing genomic data on the web, desktop, or within your own applications.
Access spectral calculations on portable devices using the HITRAN database, with downloads, source code, and support for sensors and Raspberry Pi.
Sage Bionetworks helps researchers share, analyze, and reuse biomedical data, accelerating scientific discovery with AI-powered tools and a collaborative platform.
Matplotlib is a Python library for creating static, animated, and interactive data visualizations, with extensive guides, examples, and documentation.
Access and share genomic data on viruses like influenza and COVID-19. GISAID supports global research and public health collaboration.
PhysioNet offers free access to complex physiologic signal data and tools, supporting research and collaboration in biomedical and health science fields.
Galaxy is a community-driven data analysis platform offering tools, workflows, and free tutorials for researchers, scientists, and learners worldwide.
Explore and download large-scale functional genomics data, browse experiments, and access research tools for studying human and mouse genomics.
Explore global bird conservation data, tools, and insights to support biodiversity protection, scientific research, and informed environmental decisions.
Explore agricultural research data, experimental trials, and open-source tools from the TERRA-REF project for advancing agricultural science and technology.
Access global soil data, maps, and resources with ISRIC—an open platform for soil information and collaboration among soil science professionals worldwide.
SNAP offers powerful network analysis tools and graph mining libraries for large-scale data, available in C++ and Python, ideal for research and development.
FAIRplus helps scientists manage and share life science data using FAIR principles, offering tools and guidelines to make research data more accessible.
Explore and access genomics data, resources, and tools at the National Genomics Data Center—supporting research in life and health sciences worldwide.
Explore cancer genomics data, tools, and resources to support cancer research and discovery, provided by the NCI Genomic Data Commons.
Track satellites, space debris, and space weather in real time. Get detailed data, visualizations, and tools for exploring everything in Earth orbit.
ODISSEI connects social science researchers in the Netherlands with secure data, advanced analysis tools, and collaborative research support.
Duke Rhodes iiD connects students and experts across fields to explore big data through hands-on projects, research, and educational programs.
Code Ocean offers a collaborative cloud platform for reproducible computational research, letting you manage code, data, and results in one secure place.
Explore open-source tools for big data genomics, including ADAM and Cannoli, for scalable genomic data analysis using Spark, Python, and R.
Zarr is an open community project for storing, sharing, and working with large multi-dimensional arrays, supporting efficient cloud and parallel computing.