Bioinformatics Tool

Browse 19 websites in this category

Sites where Bioinformatics Tool is a core feature are shown first, marked with a Core badge.

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biocyc.org favicon

Explore genomes and pathways with advanced tools

BioCyc offers integrated genome and metabolic pathway data for thousands of organisms, plus bioinformatics tools for research and analysis.

samtools.github.io favicon

Find DNA sequencing tools and libraries

Explore open-source tools, libraries, and file format specs for next-generation DNA sequencing developers, including C and Java APIs from Samtools.

htslib.org favicon

Process and analyze sequencing data with ease

Samtools offers a suite of open-source tools for working with high-throughput sequencing data, helping researchers process and analyze genomic datasets.

bowtie-bio.sourceforge.net favicon

Align DNA sequences quickly and efficiently

Bowtie offers a fast and efficient tool for aligning short DNA sequences to genomes, making it easier for researchers to analyze large-scale genetic data.

bio-bwa.sourceforge.net favicon

Map DNA sequences to reference genomes easily

Burrows-Wheeler Aligner (BWA) is a software tool for mapping DNA sequences to reference genomes, supporting both short and long read alignment.

samtools.sourceforge.net favicon

Get legacy SAMtools resources and info

Access information and downloads for older versions of SAMtools, a toolkit for working with DNA sequencing data in bioinformatics projects.

jalview.org favicon

Edit and analyze biological sequence alignments

Jalview is a free program for editing, visualizing, and analyzing multiple sequence alignments, offering tools for phylogenetic trees and molecular structures.

cbrc.jp favicon

Align DNA or protein sequences online fast

MAFFT is an online tool for multiple sequence alignment, helping researchers quickly align DNA or protein sequences for bioinformatics analysis.

ugene.net favicon

Visualize and analyze DNA and protein sequences

UGENE is a free, open-source bioinformatics toolkit for visualizing, aligning, assembling, and annotating DNA and protein sequences.

gmt.genome.wustl.edu favicon

Download tools for genome data analysis and modeling

Genome Modeling Tools offers resources and downloads for genomic data analysis, including support for TIGRA-SV and related research tools.

bcbio-nextgen.readthedocs.io favicon

Automate sequencing analysis with easy pipelines

Explore detailed documentation for bcbio-nextgen, a Python toolkit offering automated pipelines for high-throughput sequencing analysis in bioinformatics.

cutadapt.readthedocs.io favicon

Trim unwanted DNA sequences with easy guides

Cutadapt's documentation helps you use this tool to trim adapters and unwanted sequences from high-throughput DNA sequencing data. Clear guides and examples.

nki.nl favicon

Analyze genome editing results in minutes

TIDE analyzes DNA sequencing data to quickly identify and quantify genome editing mutations, helping researchers assess CRISPR and similar experiments easily.

strand-ngs.com favicon

Analyze next-gen sequencing data with ease

Strand NGS offers powerful tools for analyzing next generation sequencing data, supporting DNA, RNA, ChIP, and methylation workflows for researchers.

genesilico.pl favicon

Explore DNA and RNA research tools and databases

Bujnicki lab shares resources, databases, and tools for research on nucleic acids and proteins, focusing on DNA/RNA structure, repair, and interactions.

annovar.openbioinformatics.org favicon

Annotate genetic variants with detailed guides

Find clear, up-to-date documentation for ANNOVAR, a software tool used to annotate genetic variants across human and other genomes.

prinseq.sourceforge.net favicon

Easily clean and check DNA sequence data

PRINSEQ helps you quickly clean and check DNA sequence data for bioinformatics and metagenomics research. Simple tools for quality control and preprocessing.

seqera.io favicon

Combine bioinformatics results into one report

MultiQC lets you gather and visualize bioinformatics results from many samples and tools in one easy-to-read report for quick, clear analysis.

dbcls.jp favicon

Design CRISPR guides with off-target analysis

CRISPRdirect helps researchers design CRISPR guide RNAs by analyzing nucleotide sequences for potential off-target sites in genomes.